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Clean up warnings

Status: Open.

#342 In uclahs-cds/pipeline-call-sSNV;

· sorelfitzgibbon opened on Apr 24, 2025

plot_vaf:calculate_adjVAF_Python fails with multiple tumor sample input

Status: Open.

#335 In uclahs-cds/pipeline-call-sSNV;

· sorelfitzgibbon opened on Mar 22, 2025

Add SAGE

Status: Open.

#331 In uclahs-cds/pipeline-call-sSNV;

· zhuchcn opened on Jan 28, 2025

Identify Variant Callers Supported Per Consensus SNV

help wantedExtra attention is neededExtra attention is needed

questionFurther information is requestedFurther information is requested

Status: Open.

#329 In uclahs-cds/pipeline-call-sSNV;

· zhuchcn opened on Jan 21, 2025

Create separate workflows for each input type

Status: Open.

#296 In uclahs-cds/pipeline-call-sSNV;

· sorelfitzgibbon opened on May 29, 2024

Add example doc with CPU/Mem resources for very large samples

Status: Open.

#288 In uclahs-cds/pipeline-call-sSNV;

· Faizal-Eeman opened on May 10, 2024

Update contamination table instructions in README

Status: Open.

#286 In uclahs-cds/pipeline-call-sSNV;

· sorelfitzgibbon opened on May 6, 2024

Additional Benchmarking to be added to README?

Status: Open.

#285 In uclahs-cds/pipeline-call-sSNV;

· sorelfitzgibbon opened on Apr 30, 2024

standardize input structure

Status: Open.

#278 In uclahs-cds/pipeline-call-sSNV;

· sorelfitzgibbon opened on Mar 12, 2024

Add option to input 2 or more VCFs for intersection.

Status: Open.

#273 In uclahs-cds/pipeline-call-sSNV;

· sorelfitzgibbon opened on Feb 14, 2024

simplifiy samples_to_process handling

Status: Open.

#253 In uclahs-cds/pipeline-call-sSNV;

· sorelfitzgibbon opened on Dec 1, 2023

move params.germline... out of methods.config

Status: Open.

#252 In uclahs-cds/pipeline-call-sSNV;

· sorelfitzgibbon opened on Dec 1, 2023