remove PAT notice from README

sorelfitzgibbon · sorelfitzgibbon · commit 5149f4ce772b · 2025-07-02T14:52:52.000-07:00
diff --git a/README.md b/README.md
@@ -44,8 +44,6 @@ SomaticSniper, Strelka2, and MuSE require there to be **exactly one pair of inpu
 
 ## How To Run
 Below is a summary of how to run the pipeline.  See [here](https://uclahs-cds.atlassian.net/wiki/spaces/BOUTROSLAB/pages/3197004/How+to+run+a+nextflow+pipeline) for more information on running Nextflow pipelines.
-
-> **Note**: Because this pipeline uses an images stored in the GitHub Container Registry, you must set up a PAT for your GitHub account and log into the registry before running this pipeline.
 >
 1. Copy and edit the [input config file](config/template.config)
 > Make sure the reference .fa file in config file matches the reference genome in the input BAM files.

Original file line number	Diff line number	Diff line change
`@@ -44,8 +44,6 @@ SomaticSniper, Strelka2, and MuSE require there to be **exactly one pair of inpu`
`44`	`44`
`45`	`45`	`## How To Run`
`46`	`46`	`Below is a summary of how to run the pipeline. See [here](https://uclahs-cds.atlassian.net/wiki/spaces/BOUTROSLAB/pages/3197004/How+to+run+a+nextflow+pipeline) for more information on running Nextflow pipelines.`
`47`		`-`
`48`		`-> Note: Because this pipeline uses an images stored in the GitHub Container Registry, you must set up a PAT for your GitHub account and log into the registry before running this pipeline.`
`49`	`47`	`>`
`50`	`48`	`1. Copy and edit the [input config file](config/template.config)`
`51`	`49`	`> Make sure the reference .fa file in config file matches the reference genome in the input BAM files.`