Skip to content

Commit 7adf149

Browse files
Merge pull request #354 from uclahs-cds/sfitz-update-convert_BAM2Pileup-memory
give convert_BAM2Pileup 5G
2 parents 68f6086 + 9f02244 commit 7adf149

2 files changed

Lines changed: 7 additions & 6 deletions

File tree

CHANGELOG.md

Lines changed: 1 addition & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -30,6 +30,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
3030
- Update BCFtools 1.17 -> 1.21
3131
- Update NFtest for new tool versions
3232
- Set VAF plot y-limit based on max adjusted VAF
33+
- Increase convert_BAM2Pileup memory allocation
3334

3435
### Fixed
3536

config/resources.json

Lines changed: 6 additions & 6 deletions
Original file line numberDiff line numberDiff line change
@@ -817,9 +817,9 @@
817817
"max": 1
818818
},
819819
"memory": {
820-
"min": "2 GB",
821-
"fraction": 0.01,
822-
"max": "2 GB"
820+
"min": "5 GB",
821+
"fraction": 0.35,
822+
"max": "5 GB"
823823
},
824824
"retry_strategy": {
825825
"memory": {
@@ -1277,9 +1277,9 @@
12771277
"max": 1
12781278
},
12791279
"memory": {
1280-
"min": "1 GB",
1281-
"fraction": 0.01,
1282-
"max": "2 GB"
1280+
"min": "3 GB",
1281+
"fraction": 0.04,
1282+
"max": "8 GB"
12831283
},
12841284
"retry_strategy": {
12851285
"memory": {

0 commit comments

Comments
 (0)