[0.12.0] - 2022-03-28

Added

• genomepy.Annotation.lengths() to retrieve the gene/transcript lengths.
• genomepy.Annotation.from_attributes() can extract any sub-column that pesky attributes column

Changed

• updated Boyle-lab blacklists
• genomepy.Annotation.genes() default changed from bed (commonly containing transcript names) to gtf (gene names)

Fixed

• blacklists now work with GENCODE
• query_mygene no longer filters input.
• genomepy install with local provider now understands you want the annotation if you pass a path to an annotation