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[0.15.0] - 2023-02-28

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@siebrenf siebrenf released this 28 Feb 12:48

Added

  • you can now tune the cache expiration time in the config
    • create a config with genomepy config generate, then tweak the values as desired.
  • support for biopython >=1.80 with pyfaidx update
  • raise an informative error when UCSC tools are missing
    • this should only happen in Pip installations

Fixed

  • disabling already disabled plugins no longer throws an error
  • bgzipping fixes:
    • bgzip works again with python>3.7 (openssl shenanigans. tabix was deprecated for htslib)
    • genome index works with genome install --bgzip (a 2nd is created with the correct naming format)
    • export file works with genome install --bgzip
    • genomepy.install_genome(bgzip=True) returns a Genome class instance with correct paths