fixed readme for Pypi

Author: simonvh

gimmemotifs/config.py

@@ -10,7 +10,7 @@
 import os
 
 ### CONSTANTS ###
-GM_VERSION = "0.9.0.0"
+GM_VERSION = "0.9.0.2"
 BG_TYPES = ["random", "genomic", "gc", "promoter"]
 FA_VALID_BGS = ["random", "promoter", "gc", "user"]
 BED_VALID_BGS = ["random", "genomic", "gc", "promoter", "user"]

setup.cfg

@@ -23,6 +23,14 @@
 DESCRIPTION  = """GimmeMotifs is a motif prediction pipeline. 
 """
 
+# trick to get rst file for PyPi, see:
+# http://stackoverflow.com/questions/26737222/pypi-description-markdown-doesnt-work/26737672#26737672
+try:
+    import pypandoc
+    long_description = pypandoc.convert('README.md', 'rst')    
+except(IOError, ImportError):
+    long_description = open('README.md').read()
+
 DEFAULT_PARAMS = {
     "max_time": None,
     "analysis": "medium",
@@ -430,6 +438,7 @@ def run(self):
                             "install_config":install_config,
                             },
         version = GM_VERSION,
+        long_description = long_description,
         description = DESCRIPTION,
         author='Simon van Heeringen',
         author_email='simon.vanheeringen@gmail.com',