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ValueError in gimme match due to broadcasting error with shapes when using PWM input

Status: Open.

#324 In vanheeringen-lab/gimmemotifs;

· huangwx-219 opened on Jun 18, 2025

Issue running gimme maelstrom

Status: Open.

#321 In vanheeringen-lab/gimmemotifs;

· hrc312 opened on Jan 16, 2025

Cannot install package

Status: Open.

#320 In vanheeringen-lab/gimmemotifs;

· DrNamwob opened on Jul 23, 2024

Maelstrom: uninformative error when duplicate regions present

Status: Open.

#318 In vanheeringen-lab/gimmemotifs;

· shaunmahony opened on Jun 16, 2024

Supporting for metagenomic data

Status: Open.

#317 In vanheeringen-lab/gimmemotifs;

· OtaviaW opened on May 29, 2024

Gimmemotif motif scan 'score' metric

Status: Open.

#316 In vanheeringen-lab/gimmemotifs;

· momur opened on May 2, 2024

FYI: SafeConfigParser in versioneer not compatible with Python 3.12

Status: Open.

#315 In vanheeringen-lab/gimmemotifs;

· laserson opened on Apr 3, 2024

Gimme maelstrom didn't work with custom pfm file

Status: Open.

#314 In vanheeringen-lab/gimmemotifs;

· Francis3209 opened on Mar 27, 2024

Incompatibility with certain common PWM files

Status: Open.

#313 In vanheeringen-lab/gimmemotifs;

· Mitmischer opened on Mar 20, 2024

Exception on differential enrichment

Status: Open.

#312 In vanheeringen-lab/gimmemotifs;

· Mitmischer opened on Mar 17, 2024

Exception on motif enrichment analysis

Status: Open.

#311 In vanheeringen-lab/gimmemotifs;

· Mitmischer opened on Mar 15, 2024

gimme motif2factors: No Orthologs Found for any factor in my custom organism genome

Status: Open.

#307 In vanheeringen-lab/gimmemotifs;

· apposada opened on Jun 28, 2023