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Release v0.9.6

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@Maarten-vd-Sande Maarten-vd-Sande released this 31 Oct 14:03
v0.9.6
d851e1f

Automated preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows.

Changed

  • all conda environments now work with strict channel priorities
  • singlecellTK environment updated (no longer needs pip)
  • increased expected RAM usage of scRNA-seq rule sctk_qc

Fixed

  • outdated dependency in scRNA-seq rule export_sce_obj
  • error in singlecellTK script with negative count values in reportCellQC()
  • softmask_track_1 should no longer hang indefinetly
  • On UCSC assembly hubs, the softmask track should align better (fixed off-by-1)
  • upsetplot environment being broken (matplotlib version pinned)
  • deeptools environment being broken (matplotlib version pinned)
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