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feat: add support for importing ClinVar Excel files (#42) #77

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feat: add support for importing ClinVar Excel files (#42) #77

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516a4f8
feat: support for SV TSV (#75)
holtgrewe Mar 14, 2023
d018875
feat: adding support for importing phenopackets (#46)
holtgrewe Mar 14, 2023
431aade
feat: adding support for clinvar excel (#42)
holtgrewe Mar 14, 2023
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6 changes: 3 additions & 3 deletions docs/file_formats.rst
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Expand Up @@ -10,9 +10,9 @@ In the case of the non-native TSV format, this section documents how the file fo
Overall, the aim of clinvar-this is to support you in submitting data easily with restrictions (see :ref:`limitations`).
If you need the full functionality of the NCBI ClinVar API then please consider using the ``clinvar_api`` Python module.

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Small Variant TSV (Native)
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Sequence Variant TSV (Native)
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The following headers are required.
Clinvar-this will recognize the TSV file format based on these headers.
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3 changes: 3 additions & 0 deletions requirements/base.txt
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Expand Up @@ -7,3 +7,6 @@ click >=8.1.3, <9.0
toml >=0.10.2, <0.11
tabulate >= 0.9.0
jsonschema >= 4.17.0, <5.0

pandas >=1.5
phenopackets >=2