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Clarification on AA/AC outputs

Status: Open.

#161 In virajbdeshpande/AmpliconArchitect;

· kasonlin97 opened on Feb 1, 2026

The neighbors obtained by using a single Interval and multiple Intervals as inputs are inconsistent

Status: Open.

#160 In virajbdeshpande/AmpliconArchitect;

· xdwang74-hash opened on Dec 4, 2025

T2T genome

Status: Open.

#159 In virajbdeshpande/AmpliconArchitect;

· jingydz opened on Sep 19, 2025

AmpliconArchitect returned a non-zero exit code

Status: Open.

#158 In virajbdeshpande/AmpliconArchitect;

· suryasarathi00 opened on Sep 9, 2025

Log file

Status: Open.

#157 In virajbdeshpande/AmpliconArchitect;

· uretaj opened on May 25, 2025

The running time is extremely long

Status: Open.

#156 In virajbdeshpande/AmpliconArchitect;

· Fclef opened on May 2, 2025

Is Manta VCF supported as input?

Status: Open.

#155 In virajbdeshpande/AmpliconArchitect;

· lwtan90 opened on Apr 28, 2025

AA runs fail with updated Mosek license

Status: Open.

#154 In virajbdeshpande/AmpliconArchitect;

· pushpa-itagi opened on Mar 10, 2025

Duplicate removals before AmpliconArquitect

Status: Open.

#153 In virajbdeshpande/AmpliconArchitect;

· MJoseMo opened on Feb 13, 2025

AA can work for part of my wgs sequence data, but not for others.

Status: Open.

#152 In virajbdeshpande/AmpliconArchitect;

· harryjerryzhu opened on Jan 26, 2025

vcf format for SV

Status: Open.

#148 In virajbdeshpande/AmpliconArchitect;

· poojachandra opened on Sep 26, 2024

Cycle view

Status: Open.

#145 In virajbdeshpande/AmpliconArchitect;

· newpest opened on Apr 18, 2024