Speedup and new options

• By default, discard non-spliced reads in split stage
• By default, ignore start and end splice sites in segment stage
• Bugfix in cluster stage speedup

Removing the debugging psutil package

v0.3.1

Bugfix to segment

Memory improvements and stricter consensus

Merge branch 'sync_from_bench'

Conflicts:
	.gitmodules
	README.md
	Snakefile
	config.yaml
	py/freddie_cluster.py
	py/freddie_isoforms.py
	py/freddie_segment.py
	py/freddie_split.py

Minor bug fixes and up-to-date README

0.2.1

bugfix for large D in cigars

Speedups for all stages

Merge pull request #25 from vpc-ccg/speedup

Speedup

Split in parallel and with less memory

Merge pull request #23 from vpc-ccg/speedup

speedup for split

v0.1

Update README.md