6.3.1

What's Changed

• Add debug for result directory acceptance by @kjsanger in #544

Full Changelog: 6.3.0...6.3.1

6.3.0

What's Changed

• Remove iRODS versions that we will not use by @kjsanger in #534
• Add Xenium publisher by @kjsanger in #530
• Refactor to reduce runtime and towards avoiding a requirement for icommands by @kjsanger in #535
• Upgraded CI MySQL version to 8.4 by @mgcam in #537
• Bump cryptography from 46.0.5 to 46.0.7 by @dependabot[bot] in #539
• Bump pytest from 9.0.2 to 9.0.3 by @dependabot[bot] in #538
• Fixing spaces in publish_directory command help string by @jmtcsngr in #540
• Improve publish-directory docs by @ce10-sanger in #541
• Remove public read access from published Xenium data by @kjsanger in #542

New Contributors

• @jmtcsngr made their first contribution in #540

Full Changelog: 6.2.2...6.3.0

6.2.2

What's Changed

• Update SQLite to 3.5.1.3 by @kjsanger in #531

Full Changelog: 6.2.1...6.2.2

6.2.1

What's Changed

• checksum-directory: Change to --x arg style by @ce10-sanger in #528
• Add sqlite to deployment container by @kjsanger in #529

Full Changelog: 6.2.0...6.2.1

6.2.0

What's Changed

• Bump docker/login-action from 3 to 4 by @dependabot[bot] in #521
• Bump docker/setup-buildx-action from 3 to 4 by @dependabot[bot] in #522
• Bump black from 26.1.0 to 26.3.0 by @dependabot[bot] in #523
• Bump setuptools from 82.0.0 to 82.0.1 by @dependabot[bot] in #524
• Add MLWH cache hack by @kjsanger in #512
• Bump black from 26.3.0 to 26.3.1 by @dependabot[bot] in #526
• Add checksum-directory utility and publish-directory --use-checksums-file option. by @ce10-sanger in #525

Full Changelog: 6.1.2...6.2.0

6.1.2

What's Changed

• Bump setuptools from 80.10.2 to 82.0.0 by @dependabot[bot] in #511
• Bump cryptography from 46.0.3 to 46.0.4 by @dependabot[bot] in #509
• Bump cryptography from 46.0.4 to 46.0.5 by @dependabot[bot] in #514
• Upgrade Partisan to 4.1.2, minor docs fix by @ce10-sanger in #515

Full Changelog: 6.1.1...6.1.2

6.1.1

What's Changed

• Bump pytest from 8.4.2 to 9.0.1 by @dependabot[bot] in #491
• Bump actions/checkout from 5 to 6 by @dependabot[bot] in #492
• Bump black from 25.9.0 to 25.11.0 by @dependabot[bot] in #490
• Bump black from 25.11.0 to 25.12.0 by @dependabot[bot] in #494
• Bump pytest from 9.0.1 to 9.0.2 by @dependabot[bot] in #493
• Bump actions/cache from 4 to 5 by @dependabot[bot] in #496
• Bump sqlalchemy from 2.0.44 to 2.0.45 by @dependabot[bot] in #495
• Bump sqlalchemy-utils from 0.42.0 to 0.42.1 by @dependabot[bot] in #497
• Bump setuptools-git-versioning from 2.1.0 to 3.0.1 by @dependabot[bot] in #499
• Misc small fixes by @kjsanger in #504
• Update project dependencies by @kjsanger in #505
• Bump black from 25.12.0 to 26.1.0 by @dependabot[bot] in #500
• publish-directory removes public permissions unless --group public by @ce10-sanger in #501
• Bump setuptools from 80.7.1 to 80.10.2 by @dependabot[bot] in #506

Full Changelog: 6.1.0...6.1.1

6.1.0

What's Changed

• Bump cryptography from 46.0.2 to 46.0.3 by @dependabot[bot] in #484
• publish-directory: Support specifying zone with #zone syntax by @ce10-sanger in #486
• Bump structlog from 25.4.0 to 25.5.0 by @dependabot[bot] in #487
• Bump sqlalchemy from 2.0.43 to 2.0.44 by @dependabot[bot] in #483

Full Changelog: 6.0.2...6.1.0

6.0.2

What's Changed

• publish-directory: Log collection creation errors by @ce10-sanger in #481
• Bump cryptography from 46.0.1 to 46.0.2 by @dependabot[bot] in #479

Full Changelog: 6.0.1...6.0.2

6.0.1

What's Changed

• Bump baton from 5.0.0 to 6.0.0 by @kjsanger in #480

Full Changelog: 6.0.0...6.0.1