Releases: wtsi-npg/npg-irods-python
Releases · wtsi-npg/npg-irods-python
6.3.1
6.3.0
What's Changed
- Remove iRODS versions that we will not use by @kjsanger in #534
- Add Xenium publisher by @kjsanger in #530
- Refactor to reduce runtime and towards avoiding a requirement for icommands by @kjsanger in #535
- Upgraded CI MySQL version to 8.4 by @mgcam in #537
- Bump cryptography from 46.0.5 to 46.0.7 by @dependabot[bot] in #539
- Bump pytest from 9.0.2 to 9.0.3 by @dependabot[bot] in #538
- Fixing spaces in publish_directory command help string by @jmtcsngr in #540
- Improve publish-directory docs by @ce10-sanger in #541
- Remove public read access from published Xenium data by @kjsanger in #542
New Contributors
Full Changelog: 6.2.2...6.3.0
6.2.2
6.2.1
What's Changed
- checksum-directory: Change to
--xarg style by @ce10-sanger in #528 - Add sqlite to deployment container by @kjsanger in #529
Full Changelog: 6.2.0...6.2.1
6.2.0
What's Changed
- Bump docker/login-action from 3 to 4 by @dependabot[bot] in #521
- Bump docker/setup-buildx-action from 3 to 4 by @dependabot[bot] in #522
- Bump black from 26.1.0 to 26.3.0 by @dependabot[bot] in #523
- Bump setuptools from 82.0.0 to 82.0.1 by @dependabot[bot] in #524
- Add MLWH cache hack by @kjsanger in #512
- Bump black from 26.3.0 to 26.3.1 by @dependabot[bot] in #526
- Add
checksum-directoryutility andpublish-directory --use-checksums-fileoption. by @ce10-sanger in #525
Full Changelog: 6.1.2...6.2.0
6.1.2
What's Changed
- Bump setuptools from 80.10.2 to 82.0.0 by @dependabot[bot] in #511
- Bump cryptography from 46.0.3 to 46.0.4 by @dependabot[bot] in #509
- Bump cryptography from 46.0.4 to 46.0.5 by @dependabot[bot] in #514
- Upgrade Partisan to 4.1.2, minor docs fix by @ce10-sanger in #515
Full Changelog: 6.1.1...6.1.2
6.1.1
What's Changed
- Bump pytest from 8.4.2 to 9.0.1 by @dependabot[bot] in #491
- Bump actions/checkout from 5 to 6 by @dependabot[bot] in #492
- Bump black from 25.9.0 to 25.11.0 by @dependabot[bot] in #490
- Bump black from 25.11.0 to 25.12.0 by @dependabot[bot] in #494
- Bump pytest from 9.0.1 to 9.0.2 by @dependabot[bot] in #493
- Bump actions/cache from 4 to 5 by @dependabot[bot] in #496
- Bump sqlalchemy from 2.0.44 to 2.0.45 by @dependabot[bot] in #495
- Bump sqlalchemy-utils from 0.42.0 to 0.42.1 by @dependabot[bot] in #497
- Bump setuptools-git-versioning from 2.1.0 to 3.0.1 by @dependabot[bot] in #499
- Misc small fixes by @kjsanger in #504
- Update project dependencies by @kjsanger in #505
- Bump black from 25.12.0 to 26.1.0 by @dependabot[bot] in #500
- publish-directory removes public permissions unless
--group publicby @ce10-sanger in #501 - Bump setuptools from 80.7.1 to 80.10.2 by @dependabot[bot] in #506
Full Changelog: 6.1.0...6.1.1
6.1.0
What's Changed
- Bump cryptography from 46.0.2 to 46.0.3 by @dependabot[bot] in #484
- publish-directory: Support specifying zone with #zone syntax by @ce10-sanger in #486
- Bump structlog from 25.4.0 to 25.5.0 by @dependabot[bot] in #487
- Bump sqlalchemy from 2.0.43 to 2.0.44 by @dependabot[bot] in #483
Full Changelog: 6.0.2...6.1.0
6.0.2
What's Changed
- publish-directory: Log collection creation errors by @ce10-sanger in #481
- Bump cryptography from 46.0.1 to 46.0.2 by @dependabot[bot] in #479
Full Changelog: 6.0.1...6.0.2