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1. analyze_sanger analyze_sanger Public

   Automate analysis of Sanger trace data

   Python

2. compare_aa_distribution compare_aa_distribution Public

   Create amino acid count and frequency table of fastq reads aligned to a gene-specific master alignment

   Python

3. gbk_parser gbk_parser Public

   Obtain DNA sequences for features containing input tag in .gbk file

   Python

4. generate_nMA generate_nMA Public

   Generate a numbered master alignment for compare_aa_distribution.py

   Python

5. mask_aaTables mask_aaTables Public

   Remove low coverage positions from aaCount and aaFreq tables

   Python

6. panX_parser panX_parser Public

   Used to convert panX output to Roary input

   Python