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38 changes: 38 additions & 0 deletions src/bioregistry/data/bioregistry.json
Original file line number Diff line number Diff line change
Expand Up @@ -30627,6 +30627,44 @@
"pattern": "^\\d{7}$",
"uri_format": "http://purl.obolibrary.org/obo/ECAO_$1"
},
"eccdna": {
"contact": {
"email": "zhiyunguo@swjtu.edu.cn",
"name": "Zhiyun Guo",
"orcid": "0000-0003-2680-785X"
},
"contributor": {
"email": "palayoor.n@northeastern.edu",
"github": "nalikapalayoor",
"name": "Nalika Palayoor",
"orcid": "0009-0008-8406-631X"
},
"description": "scEccDNAdb is a database of single cell Extrachromosomal circular DNA entries of human and mouse samples, each with a unique identifier and features such as oncogenes, enhancers, and structural variants. Understanding Ecc DNA is important for understanding heterogeneity, evolution, development, and cellular functions.",
"example": "ecDNA_hsa_01",
"example_extras": [
"eccDNA_hsa_35832"
],
"github_request_issue": 1366,
"homepage": "https://lcbb.swjtu.edu.cn/scEccDNAdb/",
"name": "Single Cell Extrachromosomal circular DNA Database",
"pattern": "^ec(c)?DNA_[a-z]+_\\d+$",
"publications": [
{
"doi": "10.1093/database/baae126",
"pmc": "PMC11654243",
"pubmed": "39693568",
"title": "scEccDNAdb: an integrated single-cell eccDNA resource for human and mouse",
"year": 2024
}
],
"reviewer": {
"email": "b.gyori@northeastern.edu",
"github": "bgyori",
"name": "Benjamin M. Gyori",
"orcid": "0000-0001-9439-5346"
},
"uri_format": "https://lcbb.swjtu.edu.cn/scEccDNAdb/detail1.php?EccDNAid=$1"
},
"eccode": {
"bartoc": {
"description": "By the late 1950's it had become evident that the nomenclature of enzymology, in the absence of any guiding authority, in a period when the number of known enzymes was increasing rapidly, was getting out of hand. The naming of enzymes by individual workers had proved far from satisfactory in practice. In many cases the same enzymes became known by several different names, while conversely the same name was sometimes given to different enzymes. Many of the names conveyed little or no idea of the nature of the reactions catalysed, and similar names were sometimes given to enzymes of quite different types. To meet this situation, various attempts to bring order into the general nomenclature of enzymes, or into that of particular groups of enzymes, were made by individuals or small groups of specialists, but none of the resulting nomenclatures met with general approval. (...) The Enzyme List in the sixth edition (1992) contains 3540 entries, of which 178 record enzymes which are now transferred elsewhere in the list, and 166 have been deleted completely. Thus the number of enzymes actually listed is 3196, an increase of 29% on the 1984 edition.",
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1 change: 1 addition & 0 deletions src/bioregistry/data/curated_papers.tsv
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Expand Up @@ -140,6 +140,7 @@ pubmed relevant orcid date_curated relevancy_type pr_added notes
39687250 0 0009-0008-8406-631X 2025-01-07 irrelevant_other 1351
39687760 0 0009-0008-8406-631X 2025-01-10 non_resource_paper 1351
39693482 0 0009-0008-8406-631X 2025-01-14 not_identifiers_resource 1364
39693568 0 0009-0008-8406-631X 2025-01-17 new_prefix 1366
39703015 0 0009-0008-8406-631X 2025-01-07 irrelevant_other 1351
39703430 1 0009-0008-8406-631X 2025-1-10 new_prefix 1362
39719062 0 0009-0008-8406-631X 2025-01-07 not_identifiers_resource 1351
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