Add prefix: phagedive

[nagutm]

This PR curates a new prefix: phagedive.

PubMed: https://pubmed.ncbi.nlm.nih.gov/39373542/
Database: https://phagedive.dsmz.de/

It is a database of bacteriophages and archaeal viruses and provides details regarding their taxonomy, host strain, phage morphology, life cycle, origin and genomic data.

[cthoyt]

we should consider the relation to DSMZ's other resource in the bioregistry "CellDive" https://bioregistry.io/registry/dsmz, which has a top-level prefix based on the organization itself. Maybe we subspace both under dsmz.celldive and dsmz.phagedive

[nagutm]

In addition to CellDive, there is also MediaDive and BacDive which also fall under the DSMZ umbrella. Since these other prefixes are not subspaced under dsmz, could we instead consider renaming the current dsmz prefix to celldive which is more specific and update the metadata to reflect this change?

Additionally, the cellosaurus mapping for the current dsmz prefix is also for CellDive, not DSMZ as a whole. The re3data, however, is for DSMZ as a whole and would probably need to be removed.

[cthoyt]

@nagutm that's a good point! I think there are a lot of references to dsmz because the cell line resource was their first big informatics one, but I agree that swapping this out for celldive would do good in the long run

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 47.17%. Comparing base (8950e70) to head (f34baf9).
Report is 393 commits behind head on main.

Additional details and impacted files

@@            Coverage Diff             @@
##             main    #1454      +/-   ##
==========================================
+ Coverage   42.51%   47.17%   +4.66%     
==========================================
  Files         117      120       +3     
  Lines        8327     8721     +394     
  Branches     1963     1464     -499     
==========================================
+ Hits         3540     4114     +574     
+ Misses       4582     4367     -215     
- Partials      205      240      +35     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:

• ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.