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CD — Cut release on main CD — Cut release on main #19: completed by jonn-smith
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Docker Build, Push, Scan Docker Build, Push, Scan #111: Scheduled
7m 31s main
main
7m 31s
foldseek-gpu: stay on 10.0.2 Docker Build, Push, Scan #110: Commit 286e541 pushed by jonn-smith
31m 40s tshea/wdl-metagenomics-poc
tshea/wdl-metagenomics-poc
31m 40s
CD — Cut release on main CD — Cut release on main #18: completed by jonn-smith
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Docker Build, Push, Scan Docker Build, Push, Scan #109: Scheduled
6m 58s main
main
6m 58s
CD — Cut release on main CD — Cut release on main #17: completed by jonn-smith
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Docker Build, Push, Scan Docker Build, Push, Scan #108: Scheduled
7m 43s main
main
7m 43s
Add Virsorter2OnContigs workflow + untrack slide-deck sources Docker Build, Push, Scan #107: Commit c5aad5f pushed by jonn-smith
7s tshea/wdl-metagenomics-poc
tshea/wdl-metagenomics-poc
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slides: NIH preliminary HVP viral landscape deck Docker Build, Push, Scan #106: Commit ff29041 pushed by jonn-smith
8s tshea/wdl-metagenomics-poc
tshea/wdl-metagenomics-poc
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hvp_viral_viz: cohort pipeline (download → ingest → pool → label) Docker Build, Push, Scan #105: Commit 1fa14f5 pushed by jonn-smith
9s tshea/wdl-metagenomics-poc
tshea/wdl-metagenomics-poc
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Add fetch_refs.sh to download BFVD + ICTV backing data Docker Build, Push, Scan #104: Commit 1e49f17 pushed by jonn-smith
8s tshea/wdl-metagenomics-poc
tshea/wdl-metagenomics-poc
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Add hvp_viral_viz research journal Docker Build, Push, Scan #103: Commit d3dce06 pushed by jonn-smith
10s tshea/wdl-metagenomics-poc
tshea/wdl-metagenomics-poc
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ci(docker): honor per-image PLATFORMS for build-per-arch matrix + merge Docker Build, Push, Scan #102: Commit 33da9a6 pushed by jonn-smith
8s tshea/wdl-metagenomics-poc
tshea/wdl-metagenomics-poc
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diag(foldseek-gpu): add verbose-prostt5 patch + Dockerfile wiring Docker Build, Push, Scan #101: Commit c3bc0d9 pushed by jonn-smith
27m 34s tshea/wdl-metagenomics-poc
tshea/wdl-metagenomics-poc
27m 34s
diag(wdl): emit nvidia-smi + CUDA env in FoldseekCreateDbFromFasta / … Docker Build, Push, Scan #100: Commit 5471679 pushed by jonn-smith
8s tshea/wdl-metagenomics-poc
tshea/wdl-metagenomics-poc
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Fixed task in ConcatProteinFastas to be more concise. Docker Build, Push, Scan #99: Commit 3fea3c6 pushed by jonn-smith
9s tshea/wdl-metagenomics-poc
tshea/wdl-metagenomics-poc
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fix(wdl): guard ConcatProteinFastas against silent localization failures Docker Build, Push, Scan #98: Commit a2daa8d pushed by tpshea2
8s tshea/wdl-metagenomics-poc
tshea/wdl-metagenomics-poc
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CD — Cut release on main CD — Cut release on main #16: completed by jonn-smith
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Docker Build, Push, Scan Docker Build, Push, Scan #97: Scheduled
7m 12s main
main
7m 12s
feat(wdl): add optional bfvd_db_tgz_padded input for GPU foldseek search Docker Build, Push, Scan #96: Commit a10eb37 pushed by jonn-smith
8s tshea/wdl-metagenomics-poc
tshea/wdl-metagenomics-poc
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chore: gitignore scripts/mirror-ghcr-to-gar.sh Docker Build, Push, Scan #95: Commit 0df1167 pushed by jonn-smith
36m 57s tshea/wdl-metagenomics-poc
tshea/wdl-metagenomics-poc
36m 57s
fix(wdl): collapse GPU task zones to us-central1 only Docker Build, Push, Scan #94: Commit e39139b pushed by jonn-smith
7s tshea/wdl-metagenomics-poc
tshea/wdl-metagenomics-poc
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chore(repo): untrack pad_bfvd_for_gpu.sh; document padded BFVD requir… Docker Build, Push, Scan #93: Commit 1ff6417 pushed by jonn-smith
8s tshea/wdl-metagenomics-poc
tshea/wdl-metagenomics-poc
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fix: use proviral_length for proviruses in viral N50/total_bases Docker Build, Push, Scan #92: Commit 8edc275 pushed by tpshea2
11s tshea/wdl-metagenomics-poc
tshea/wdl-metagenomics-poc
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feat(wdl): GPU-enable FoldseekCreateDbFromFasta + FoldseekSearch Docker Build, Push, Scan #91: Commit 7681d28 pushed by jonn-smith
9s tshea/wdl-metagenomics-poc
tshea/wdl-metagenomics-poc
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