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neuroinformatics-unit / OSCaR Public

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Fetch data directly from pyRAT's api#30

Merged

K-Meech merged 31 commits into

mainneuroinformatics-unit/OSCaR:mainfrom

km/pyrat-apineuroinformatics-unit/OSCaR:km/pyrat-apiCopy head branch name to clipboard

Apr 13, 2026

Conversation Commits31 (31)Checks Files changed

Merged

Fetch data directly from pyRAT's api#30
K-Meech merged 31 commits into
mainfrom
km/pyrat-api

Commits

Commits on Mar 25, 2026

add python-dotenv
K-Meech
committed
add function to fetch data from the pyrat api
K-Meech
committed
remove un-needed dependency
K-Meech
committed

Commits on Mar 26, 2026

add function to retreive species id from the pyrat api
K-Meech
committed
add filtering by line name
K-Meech
committed
add filtering by date of birth
K-Meech
committed
change payload to params and expand docstrings
K-Meech
committed
merge father and mother ids into the main table
K-Meech
committed

Commits on Mar 27, 2026

merge upstream changes
K-Meech
committed
move pyrat files into sub-module
K-Meech
committed
refactor mutations expansion into its own function
K-Meech
committed
separate expanding parent column into another function
K-Meech
committed
working conversion of api info to pandas dataframe
K-Meech
committed
expand docstrings for pyRAT api functions
K-Meech
committed
rename species_name to Species
K-Meech
committed

Commits on Apr 8, 2026

draft of allowing large responses to be split into many
K-Meech
committed
mock father and mother api responses
K-Meech
committed

Commits on Apr 9, 2026

allow parameterization of pyrat api test
K-Meech
committed
allow fetching any pooch datset with a common function
K-Meech
committed
test get_pyrat_data response against expected csv
K-Meech
committed
handle no animal data returned from api
K-Meech
committed
add test for multiple api responses
K-Meech
committed
pull json response info directly from pooch
K-Meech
committed
handle some missing parent data in responses
K-Meech
committed
handle no listed parents or mutations in responses
K-Meech
committed
handle some entries missing one parent id
K-Meech
committed
handle all returned individuals missing one parent
K-Meech
committed
update get_pyrat_data args to match new test data
K-Meech
committed

Commits on Apr 13, 2026

add test for invalid dates and species names
K-Meech
committed
update pyrat api docstrings
K-Meech
committed
add colony_management sub-module
K-Meech
committed

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