Repositories list

• aviti_genome_skim_24032

  Public
  Mitogenome assembly quality analysis for Naturalis AVITI run 20260428_AV250703_24032-5021000_28_04_2026

  HTML

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 8, 2026Jul 8, 2026

• sdmdl

  Public
  Species Distribution Modelling using Deep Learning

  deep-learningbiodiversity-patternsecological-niche-modelling+ 1

  deep-learningbiodiversity-patternsecological-niche-modellingdl-sdm

  Python

  •

  MIT License

  •1212 forks•2929 stars•44 issues•1010 pull requests•Updated Jul 7, 2026Jul 7, 2026

• galaxy-tool-BLAST

  Public
  A new tool and wrapper for the identification with blastn

  Python

  •22 forks•00 stars•22 issues•11 pull request•Updated Jun 19, 2026Jun 19, 2026

• DWCAConfig

  Public
  DWCA Configuratie bestanden om data te downloaden uit ES (NBA)

  Shell

  •22 forks•11 star•11 issue•00 pull requests•Updated Jun 8, 2026Jun 8, 2026

• barcode_validator

  Public
  Standardized validation of DNA barcodes

  Python

  •

  Apache License 2.0

  •77 forks•22 stars•77 issues•00 pull requests•Updated May 27, 2026May 27, 2026

• galaxy-tool-edentity-metabarcoding-pipeline

  Public
  Python

  •

  Apache License 2.0

  •00 forks•11 star•00 issues•22 pull requests•Updated May 22, 2026May 22, 2026

• BGE_data_processing_skimming

  Public
  BGE sample download, checksum, sample-range, plate-split; prep for MGE

  Shell

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 30, 2026Apr 30, 2026

• galaxy-tool-lca

  Public
  Python

  •33 forks•33 stars•11 issue•11 pull request•Updated Apr 21, 2026Apr 21, 2026

• BGE_relations_ENA

  Public
  Assess parent-child project hierarchies in ENA

  HTML

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 14, 2026Apr 14, 2026

• mycodiversity

  Public
  Pipelines for analyzing fungal diversity

  Python

  •

  MIT License

  •11 fork•11 star•00 issues•33 pull requests•Updated Apr 3, 2026Apr 3, 2026

• treebase-artifact

  Public
  Treebase binaries for deployment

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 5, 2026Jan 5, 2026

• galaxy-tool-monophylizer

  Public
  Galaxy tool for assessing monophyly in barcode gene trees

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 17, 2025Dec 17, 2025

• galaxy-tool-structural-validator

  Public
  Galaxy tool for structural validation of DNA barcode data

  Apache License 2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 17, 2025Dec 17, 2025

• monophylizer

  Public
  A web tool to assess monophyly in trees as produced by BOLD systems

  HTML

  •

  Apache License 2.0

  •11 fork•11 star•11 issue•00 pull requests•Updated Dec 13, 2025Dec 13, 2025

• galaxy-tool-make-otu-table

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 29, 2025Oct 29, 2025

• evobio2

  Public
  EvBio2 UL computer practicum

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 7, 2025Oct 7, 2025

• galaxy-pipeline-hybseq

  Public
  End-to-end implementation of HybSeq analysis in Naturalis's Galaxy portal

  Python

  •

  MIT License

  •11 fork•00 stars•11 issue•00 pull requests•Updated Sep 26, 2025Sep 26, 2025

• galaxy-tool-spreading-correction

  Public
  galaxy wrapper for spreading-correction

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 26, 2025Sep 26, 2025

• galaxy-tool-prinseq-sequence-analysis

  Public
  transferred from old galaxy

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 26, 2025Sep 26, 2025

• galaxy-tool-sickle-pe

  Public
  Galaxy wrapper for sickle paired-end trimming, input is a zip file

  Python

  •11 fork•00 stars•00 issues•00 pull requests•Updated Sep 26, 2025Sep 26, 2025

• galaxy-tool-taxonomic-accumulation

  Public
  Use a python script to accumulate all identifications based on taxonomy.

  Python

  •

  GNU Affero General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 26, 2025Sep 26, 2025

• galaxy-tool-UMI-isolation

  Public
  Python

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•11 pull request•Updated Sep 26, 2025Sep 26, 2025

• galaxy-tool-prinseq-sequence-trimmer

  Public
  Galaxy prinseq trim tool (transferred from old galaxy)

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 26, 2025Sep 26, 2025

• galaxy-tool-split-on-primer

  Public
  Split_on_primer tool for galaxy (transferred from old galaxy)

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 26, 2025Sep 26, 2025

• galaxy-tool-manage-zip

  Public
  Manage zip tool for galaxy (transferred from old galaxy)

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 26, 2025Sep 26, 2025

• galaxy-tool-gz-decompress

  Public
  convert fastq.gz.zip to fastq.zip

  Shell

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 26, 2025Sep 26, 2025

• galaxy-tool-nucleotide-translation

  Public
  Translate nucleotide sequences and count stop codons

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 26, 2025Sep 26, 2025

• galaxy-tool-otutab_trim

  Public
  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 26, 2025Sep 26, 2025

• galaxy-tool-flash

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 26, 2025Sep 26, 2025

• galaxy-tool-taxonmatcher

  Public
  Find for your input taxonomy the taxonomy from an other database

  Python

  •00 forks•44 stars•11 issue•00 pull requests•Updated Sep 26, 2025Sep 26, 2025