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Best practice for WES signature assignment catalog selection in MuSiCal

Status: Open.

#90 In parklab/MuSiCal;

· Sawakotx opened on Dec 20, 2025

The job stops after finding lambda_tilde

Status: Open.

#89 In parklab/MuSiCal;

· liumoLM opened on Mar 9, 2025

Identifying New Signatures Present in my Cohort

Status: Open.

#88 In parklab/MuSiCal;

· gretherv opened on Feb 18, 2025

how to generate TriNucFreq_Weights.csv

Status: Open.

#87 In parklab/MuSiCal;

· timchu90 opened on Feb 18, 2025

Gini coefficient calculation does not deal with all-zero inputs

Status: Open.

#86 In parklab/MuSiCal;

· Hu-JIN opened on Feb 14, 2025

Inconsistency in the example script on restricting to tumor type-specific signatures during refitting

Status: Open.

#85 In parklab/MuSiCal;

· Hu-JIN opened on Feb 10, 2025

How to account for cohort stratification?

Status: Open.

#84 In parklab/MuSiCal;

· vanshikabidhan opened on Jan 9, 2025

"maximum number of iterations reached" in de novo signatures extraction

Status: Open.

#83 In parklab/MuSiCal;

· Spirit-booze opened on Oct 31, 2024

Matching and Referring - Signature Assignment

Status: Open.

#82 In parklab/MuSiCal;

· shengxindaniu opened on Oct 17, 2024

MuSiCal looses signatures when refitting against reduced set of signatures

Status: Open.

#81 In parklab/MuSiCal;

· quail768 opened on Oct 11, 2024

TypeError: _nnls.nnls() missing required argument 'n' (pos 3)

Status: Open.

#80 In parklab/MuSiCal;

· andreyurch opened on Sep 19, 2024