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bugfix for kintree stencil creation #319

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bugfix for kintree stencil creation #319

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4 changes: 1 addition & 3 deletions tmol/kinematics/scan_ordering.py
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Original file line number Diff line number Diff line change
Expand Up @@ -799,7 +799,7 @@ def gen_depth_given_first_descendant():
)
else:

if is_conn_atom[k_atom_ind]:
if j != n_conn + 1 and is_conn_atom[k_atom_ind]:
# In this case, "the" connection (there can possibly be more than one!)
# will be the first child and the other descendants will be second children.
# We save the gen depth, but when calculating the gen depth of the
Expand All @@ -808,8 +808,6 @@ def gen_depth_given_first_descendant():
# intra-residue bits and the gen-depth of the nodes downstream of it.
# TO DO: This case needs to be properly handled when calculating the
# maximum number of generations to run gen-seg-scan.
# if target:
# print("conn atom", bt.atom_name(k_atom_ind))
gen_depth[k_atom_ind] = max([gen_depth[l] for l in k_kids]) + 1
else:
_handle_case_of_no_exit_scan_path_segment(
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