phyloFlash v3.4.2

fixed minor bugs and the read count issue

phyloFlash v3.4.1

This is a minor release that fixes some bugs. Key change is switching the recommended installation routine to mamba

phyloFlash v3.4

This release accompanies the publication of the phyloFlash manuscript in msystems - https://doi.org/10.1128/mSystems.00920-20
Includes the addition of i) read length auto detection and ii) the possibility to change database min length to facilitate user built reference databases. Some minor fixes.

phyloFlash v3.3 beta 4

Fixes read count issues in NTU tables and adds documentation

phyloFlash v3.3 beta 3-test

Improve single read compatability - cudos to @rpetit3

phyloFlash v3.3 beta 3

fixed single read issues and updated docs

phyloFlash v3.3 beta 2

Fixes several minor issues and ensures compatibility with new SILVA file names

phyloFlash v3.3 beta 1

release for archiving with zenodo

phyloFlash v3.3 beta 1

Minor number changes but a big step ahead:

New features

SortmeRNA as an alternative read recruitment option
New utilities to compare phyloFlash runs
Assembly graph based binning scripts

##fixes and updates
docs are improved
minimum identity for bbmap now at 50%
empty results problems are fixed
... so many more little things

phyloFlash v3.1 beta 2

pf3.1b2

fix awk call