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Releases: jakeberv/bifrost

bifrost 0.1.4

20 Apr 02:00
@jakeberv jakeberv
v0.1.4
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bifrost 0.1.4 Latest
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  • Documentation / vignettes:

    • Added a new "Quick Start with bifrost" vignette with a minimal end-to-end simulated example.
    • Clarified searchOptimalConfiguration() documentation around acceptable tree inputs, recommended mvgls() methods ("H&L" vs "LL"), and the role of error = TRUE.
    • Reworked the README to foreground installation, documentation, and citation guidance.
    • Added two pkgdown-only background articles on multivariate Brownian motion / shifts and on whole-tree PCA / model-selection issues.

  • Citation / metadata:

    • Updated package authorship metadata to reflect the current author list.
    • Updated citation("bifrost") for the live bioRxiv preprint and the in-press application paper.
    • Added the foundational mvMORPH citations to the package citation metadata.
    • Added a formatted citation section and dynamic bioRxiv badge to the README.

  • Maintenance:

    • Disabled a deprecated vignette-preview step in GitHub Actions CI.
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v0.1.3 — Initial GitHub Release

22 Jan 19:36
@jakeberv jakeberv
v0.1.3
42e117e
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v0.1.3 — Initial GitHub Release

This is the first GitHub release of bifrost, corresponding to the current CRAN version (0.1.3).

Overview

bifrost is an R package for detecting and visualizing cladogenic shifts in multivariate trait evolution on phylogenies. It is designed for high-dimensional morphological datasets and large trees, using penalized-likelihood multivariate GLS models and a greedy, step-wise shift-search framework.

Highlights
• Improved plotting and visualization tools for inspecting evolutionary rate shifts and information-criterion trajectories.
• Updated jaw-shape vignette with additional figures and clearer examples based on a Paleozoic fish dataset.
• Documentation and test-suite improvements to improve robustness and clarity following the initial CRAN release.

Availability
• CRAN: https://cran.r-project.org/package=bifrost
• Documentation & vignettes: https://jakeberv.com/bifrost/

This release reflects the current stable state of the package following the initial CRAN launch.

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